STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alpk1Uncharacterized protein. (300 aa)    
Predicted Functional Partners:
tifa
Si:ch211-15b10.6.
   
 
 0.862
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
     
 0.684
LOC107099037
Tudor domain containing 7 b.
   
    0.534
LOC107101106
Tudor domain containing 7 a.
   
    0.534
agmo
Alkylglycerol monooxygenase; Belongs to the sterol desaturase family.
      
 0.481
ENSCVAP00000011893
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
     
 0.456
LOC107085741
Sterile alpha motif and leucine zipper containing kinase AZK.
     
 0.456
LOC107097523
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
     
 0.456
map3k20
Protein kinase domain-containing protein.
     
 0.456
irak1
Interleukin-1 receptor-associated kinase 1.
     
 0.446
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (20%) [HD]