STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107103132Si:ch73-281f12.4. (1145 aa)    
Predicted Functional Partners:
ENSCVAP00000032118
Guanylate kinase-like domain-containing protein.
   
 
 0.524
rab11a
RAB11a, member RAS oncogene family.
   
 0.495
LOC107088590
Uncharacterized protein.
   
 0.495
LOC107095311
RAB11B, member RAS oncogene family, b.
   
 0.495
LOC107095305
Uncharacterized protein.
   
 0.495
rab25
RAB25, member RAS oncogene family b.
   
 0.495
LOC107104048
RAB11a, member RAS oncogene family, like.
   
 0.495
LOC107083238
Uncharacterized protein.
   
 0.495
rabl2b
RAB, member of RAS oncogene family-like 2.
   
 0.495
exoc6
Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.
   
 0.436
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.