STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107102532Complement 4B (Chido blood group). (1690 aa)    
Predicted Functional Partners:
cfi
Uncharacterized protein; Belongs to the peptidase S1 family.
   
 0.776
ENSCVAP00000012078
Uncharacterized protein.
    
 0.764
LOC107098710
Uncharacterized protein.
   
 0.727
LOC107098502
Uncharacterized protein; Belongs to the peptidase S1 family.
   
 0.613
LOC107102499
Si:ch1073-280e3.1; Belongs to the peptidase S1 family.
   
 0.613
LOC107098503
Uncharacterized protein; Belongs to the peptidase S1 family.
   
 0.613
cfp
Uncharacterized protein.
   
 0.609
RING1
Ring finger protein 1.
    
 0.587
rnf2
Ring finger protein 2.
    
 0.587
ENSCVAP00000006163
Bmi1 polycomb ring finger oncogene 1a.
    
 0.585
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.