STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irf7Interferon regulatory factor 7. (439 aa)    
Predicted Functional Partners:
LOC107097205
Interferon regulatory factor 3.
     
0.982
tbk1
TANK-binding kinase 1.
   
 0.976
Ikbke
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
   
 0.972
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.967
CHUK
Component of inhibitor of nuclear factor kappa B kinase complex.
    
 0.954
LOC107092307
TRIF-NTD domain-containing protein.
    
 0.952
LOC107086576
Protein kinase domain-containing protein.
    
 0.938
LOC107093789
Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
    
 0.907
myd88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
   
 0.890
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.785
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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