STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107086925Si:busm1-52i16.2. (334 aa)    
Predicted Functional Partners:
pex19
Peroxisomal biogenesis factor 19.
    
 0.625
pex3
Peroxisomal biogenesis factor 3.
     
 0.611
pex13
Peroxisomal biogenesis factor 13.
     
 0.594
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
     
 0.588
pex16
Peroxisomal membrane protein PEX16.
     
 0.585
pex11g
Peroxisomal biogenesis factor 11 gamma.
    
 0.536
pex11b
Peroxisomal biogenesis factor 11 beta.
    
 0.536
LOC107100585
Peroxisomal biogenesis factor 11 alpha.
    
 0.536
gdap1l1
Ganglioside induced differentiation associated protein 1-like 1.
    
 0.521
gdap1
Ganglioside induced differentiation associated protein 1.
    
 0.521
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.