STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107099642Taxilin gamma. (447 aa)    
Predicted Functional Partners:
trappc3
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
      
 0.562
stard5
StAR-related lipid transfer (START) domain containing 5.
      
 0.562
LOC107081878
Syntaxin 1A (brain); Belongs to the syntaxin family.
    
 0.466
LOC107097655
Syntaxin 1B; Belongs to the syntaxin family.
    
 0.466
stx2
Syntaxin 2b; Belongs to the syntaxin family.
    
 0.466
LOC107102333
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.466
stx3
Syntaxin 3A; Belongs to the syntaxin family.
    
 0.466
LOC107093814
Syntaxin 4; Belongs to the syntaxin family.
    
 0.454
LOC107098334
Syntaxin 11a; Belongs to the syntaxin family.
    
 0.420
LOC107101860
t-SNARE coiled-coil homology domain-containing protein.
    
 0.420
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.