STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gata1Uncharacterized protein. (256 aa)    
Predicted Functional Partners:
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.926
Zfpm1
Zinc finger protein, FOG family member 1.
   
 0.902
ENSCVAP00000019170
BHLH domain-containing protein.
   
 0.756
LOC107083754
T-cell acute lymphocytic leukemia 1.
   
 0.756
ENSCVAP00000011115
NK2 homeobox 5.
   
 0.713
zfpm2
Zinc finger protein, FOG family member 2a.
    
 0.686
LOC107092878
E1A binding protein p300 a.
    
 0.658
ep300
E1A binding protein p300 b.
    
 0.658
LOC107090769
LIM-domain binding 1b.
    
 0.641
LOC107098178
Runt-related transcription factor.
    
 0.611
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.