STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000007060DUF3480 domain-containing protein. (296 aa)    
Predicted Functional Partners:
smad2
Mothers against decapentaplegic homolog.
   
 0.970
LOC107098778
Mothers against decapentaplegic homolog.
   
 0.970
smad3
Mothers against decapentaplegic homolog.
   
 0.970
SMAD3
Mothers against decapentaplegic homolog.
   
 0.970
zfyve9
Zinc finger, FYVE domain containing 9a.
     
 
0.900
LOC107084459
Mothers against decapentaplegic homolog.
   
 0.634
LOC107088450
Mothers against decapentaplegic homolog.
   
 0.634
ENSCVAP00000021102
MH2 domain-containing protein.
   
 0.634
ptpn23
Protein tyrosine phosphatase, non-receptor type 23, a.
   
 
 0.626
smad1
Mothers against decapentaplegic homolog.
   
 0.586
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.