STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000007076Uncharacterized protein. (62 aa)    
Predicted Functional Partners:
nup93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
   
 0.902
nup155
Nucleoporin 155.
   
 0.890
NUP54
Nucleoporin 54.
   
 0.887
nup85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.869
nup133
Nucleoporin 133.
   
 0.868
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.864
nup153
Nucleoporin 153.
   
 0.862
ENSCVAP00000015390
Uncharacterized protein.
   
 0.858
LOC107092869
Ran GTPase activating protein 1b.
   
 0.844
rangap1
RAN GTPase activating protein 1a.
   
 0.844
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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