STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107099025RPGR interacting protein 1. (908 aa)    
Predicted Functional Partners:
LOC107096828
Uncharacterized protein.
    
 
 0.960
ENSCVAP00000010027
Uncharacterized protein.
    
 0.812
nphp4
Uncharacterized protein.
    
 0.812
rcc1
Regulator of chromosome condensation 1.
    
 
 0.809
nphp1
Nephronophthisis 1.
    
 0.689
nek8
Protein kinase domain-containing protein.
    
 
 0.680
cep290
Centrosomal protein 290.
    
 
 0.668
spata7
Uncharacterized protein.
   
 
 0.661
foxred1
FAD-dependent oxidoreductase domain containing 1.
      
 0.628
yars2
Tyrosine--tRNA ligase.
      
 0.613
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.