STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox1HMG box domain-containing protein. (349 aa)    
Predicted Functional Partners:
LOC107088696
POU domain, class 5, transcription factor 3.
    
 0.766
LOC107087240
Gonadotropin releasing hormone receptor 4.
   
  
 0.669
lmo7
LIM domain 7a.
    
 
 0.669
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
      
 0.669
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.567
sall4
Spalt-like transcription factor 4.
   
 0.493
pax6
Paired box 6b.
   
 
 0.471
LOC107101293
Uncharacterized protein.
    
 0.455
LOC107090777
Junction plakoglobin a.
    
 0.455
prdm14
PR domain containing 14.
    
 0.436
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.