STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107090489Mal, T cell differentiation protein 2 (gene/pseudogene). (187 aa)    
Predicted Functional Partners:
tpd52
Tumor protein D52.
   
 
 0.648
tpd52l2
Tpd52 like 2b.
   
 
 0.616
ctdnep1
CTD nuclear envelope phosphatase 1b.
      
 0.610
LOC107083015
Si:ch211-191a24.4.
      
 0.485
LOC107090708
Tpd52 like 2a.
   
 
 0.466
rad1
RAD1 homolog (S. pombe).
      
 0.449
lratd1
LRAT domain containing 1.
   
  
 0.411
CDC42
Cell division cycle 42.
      
 0.410
LOC107085118
Uncharacterized protein.
      
 0.410
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.