STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tm9sf2Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (670 aa)    
Predicted Functional Partners:
tmed10
Transmembrane p24 trafficking protein 10.
   
  
 0.878
vps54
VPS54 subunit of GARP complex.
      
 0.648
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
   
  
 0.647
fam234b
Family with sequence similarity 234 member B.
      
 0.610
sptssa
Serine palmitoyltransferase, small subunit A.
      
 0.493
tmem165
GDT1 family protein.
   
  
 0.490
ENSCVAP00000003336
UDP-glucose pyrophosphorylase 2.
   
  
 0.482
ugp2
UTP--glucose-1-phosphate uridylyltransferase.
   
  
 0.482
hvcn1
Hydrogen voltage-gated channel 1.
      
 0.450
eef1aknmt
Methyltransferase like 13.
      
 0.439
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.