STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
golga3Golgin A3. (1515 aa)    
Predicted Functional Partners:
LOC107084753
Rho family GTPase 2.
    
 0.661
tmf1
TATA element modulatory factor 1.
   
 
 0.611
arl1
ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family.
    
 0.608
LOC107103513
Uncharacterized protein.
    
  0.602
LOC107099433
Trafficking protein particle complex 8.
   
 
 0.591
vrk1
VRK serine/threonine kinase 1; Belongs to the protein kinase superfamily.
    
 0.585
LOC107081765
VRK serine/threonine kinase 2.
    
 0.585
gopc
Golgi-associated PDZ and coiled-coil motif containing.
   
 
 0.582
rnpc3
RNA-binding region (RNP1, RRM) containing 3.
   
  
 0.573
ppp2r1b
Protein phosphatase 2, regulatory subunit A, beta b.
   
  0.570
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.