STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfngBeta-1,3-N-acetylglucosaminyltransferase. (368 aa)    
Predicted Functional Partners:
LOC107083079
Notch receptor 3.
    
 0.917
LOC107089721
Notch receptor 2.
    
 0.917
LOC107098104
Notch receptor 1b.
    
 0.917
notch1
Notch receptor 1a.
    
 0.917
nelfb
Negative elongation factor complex member B.
   
 0.741
LOC107085089
Hexosyltransferase.
      
 0.665
polr2h
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.657
IKZF4
IKAROS family zinc finger 4.
   
  
 0.648
ENSCVAP00000009864
Sarcoglycan, alpha.
      
 0.641
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
    
 0.613
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.