STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbmxRNA binding motif protein X-linked. (385 aa)    
Predicted Functional Partners:
LOC107102835
RRM domain-containing protein.
   
0.961
LOC107100983
Heterogeneous nuclear ribonucleoprotein M.
   
 0.957
hnrnpa3
Heterogeneous nuclear ribonucleoprotein A3.
  
0.944
LOC107091875
Heterogeneous nuclear ribonucleoprotein A1a.
  
0.943
LOC107084137
Uncharacterized protein.
   
 0.915
YTHDC2
YTH domain containing 2.
   
 0.698
rps4x
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.
   
 0.678
ncbp2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
  
0.666
srsf2
Serine and arginine rich splicing factor 2a.
  
0.664
ENSCVAP00000023138
Heterogeneous nuclear ribonucleoprotein K.
   
 0.641
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.