STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095034Upper zone of growth plate and cartilage matrix associated b. (178 aa)    
Predicted Functional Partners:
cd81
Tetraspanin.
   
  
 0.663
Fibin
Fin bud initiation factor a.
      
 0.641
pkp3
Plakophilin 3b.
      
 0.641
zfc3h1
Uncharacterized protein.
      
 0.635
LOC107100987
AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.
      
 0.635
Tbc1d15
TBC1 domain family, member 15.
      
 0.633
LOC107086799
Zinc finger protein 536.
     
 0.626
LOC107095104
Fin bud initiation factor b.
      
 0.618
LOC107103155
C2 domain-containing protein.
      
 0.599
ush1c
Usher syndrome 1C.
      
 0.596
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.