STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107099037Tudor domain containing 7 b. (1134 aa)    
Predicted Functional Partners:
piwil2
Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family.
   
 0.750
tdrd9
Tudor domain containing 9.
   
 0.568
akap1
A kinase (PRKA) anchor protein 1b.
   
 0.537
alpk1
Uncharacterized protein.
   
    0.534
dnd1
RRM domain-containing protein.
    
 
 0.477
pld6
PLD phosphodiesterase domain-containing protein.
   
  
 0.464
fkbp6
Peptidylprolyl isomerase.
   
 
 0.457
MARF1
Meiosis regulator and mRNA stability factor 1.
      
 0.448
ENSCVAP00000007305
Ankyrin repeat, SAM and basic leucine zipper domain containing 1.
   
 0.416
ENSCVAP00000009943
Nanos homolog 3; Belongs to the nanos family.
   
  
 0.416
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.