STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pla2g1bPhospholipase A(2). (144 aa)    
Predicted Functional Partners:
LOC107102418
PLA2c domain-containing protein.
     
 0.922
LOC107086825
PA2c domain-containing protein.
     
 0.922
proca1
Protein interacting with cyclin A1.
     
 0.920
LOC107083037
Phospholipase A(2).
  
  
 
0.908
LOC107097125
Phospholipase A2, group XIIB.
   
 
  0.907
LOC107085496
Uncharacterized protein.
   
 
  0.907
pla2g12a
Phospholipase A2, group XIIA.
   
 
  0.907
LOC107097128
Uncharacterized protein.
   
 
  0.907
LOC107091060
Phospholipase A(2).
  
  
 
0.903
LOC107094618
Cytochrome P450, family 2, subfamily U, polypeptide 1.
   
 
  0.900
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.