pax1 protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pax1

Paired box 1a. (360 aa)

Predicted Functional Partners:

tbx1

0.637

LOC107097196

0.533

mapk7

0.530

LOC107088941

0.520

meox2

0.517

LOC107090047

0.516

foxn1

0.489

msx1

0.475

LOC107086590

0.405

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107086590	pax1	ENSCVAP00000002822	ENSCVAP00000007325	Muscle segment homeobox 3.	Paired box 1a.	0.405
LOC107088941	mapk7	ENSCVAP00000004030	ENSCVAP00000022745	Basonuclin 2.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.400
LOC107088941	pax1	ENSCVAP00000004030	ENSCVAP00000007325	Basonuclin 2.	Paired box 1a.	0.520
LOC107090047	pax1	ENSCVAP00000023100	ENSCVAP00000007325	Homeobox domain-containing protein.	Paired box 1a.	0.516
LOC107097196	pax1	ENSCVAP00000004324	ENSCVAP00000007325	Paired box 10.	Paired box 1a.	0.533
foxn1	pax1	ENSCVAP00000008366	ENSCVAP00000007325	Forkhead box N1.	Paired box 1a.	0.489
mapk7	LOC107088941	ENSCVAP00000022745	ENSCVAP00000004030	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Basonuclin 2.	0.400
mapk7	pax1	ENSCVAP00000022745	ENSCVAP00000007325	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Paired box 1a.	0.530
meox2	pax1	ENSCVAP00000022280	ENSCVAP00000007325	Mesenchyme homeobox 2a.	Paired box 1a.	0.517
msx1	pax1	ENSCVAP00000001575	ENSCVAP00000007325	Muscle segment homeobox 1a.	Paired box 1a.	0.475
pax1	LOC107086590	ENSCVAP00000007325	ENSCVAP00000002822	Paired box 1a.	Muscle segment homeobox 3.	0.405
pax1	LOC107088941	ENSCVAP00000007325	ENSCVAP00000004030	Paired box 1a.	Basonuclin 2.	0.520
pax1	LOC107090047	ENSCVAP00000007325	ENSCVAP00000023100	Paired box 1a.	Homeobox domain-containing protein.	0.516
pax1	LOC107097196	ENSCVAP00000007325	ENSCVAP00000004324	Paired box 1a.	Paired box 10.	0.533
pax1	foxn1	ENSCVAP00000007325	ENSCVAP00000008366	Paired box 1a.	Forkhead box N1.	0.489
pax1	mapk7	ENSCVAP00000007325	ENSCVAP00000022745	Paired box 1a.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.530
pax1	meox2	ENSCVAP00000007325	ENSCVAP00000022280	Paired box 1a.	Mesenchyme homeobox 2a.	0.517
pax1	msx1	ENSCVAP00000007325	ENSCVAP00000001575	Paired box 1a.	Muscle segment homeobox 1a.	0.475
pax1	tbx1	ENSCVAP00000007325	ENSCVAP00000024428	Paired box 1a.	T-box transcription factor 1.	0.637
tbx1	pax1	ENSCVAP00000024428	ENSCVAP00000007325	T-box transcription factor 1.	Paired box 1a.	0.637