Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spty2d1SPT2 chromatin protein domain containing 1. (693 aa)    
Predicted Functional Partners:
LOC107085413
UEV domain-containing protein.
   
 
 0.927
rrp8
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
    
 
 0.744
LOC107091769
Cwf21 domain-containing protein.
   
 
 0.729
figla
Folliculogenesis specific bHLH transcription factor.
      
 0.726
ELOB
Elongin B.
    
 0.723
LOC107084765
Elongin B.
    
 0.723
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.647
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
    
   0.638
cul2
Cullin 2; Belongs to the cullin family.
    
 0.632
mphosph8
Chromo domain-containing protein.
    
 0.622
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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