LOC107081285 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107081285

SH3 and SYLF domain containing 1. (143 aa)

Predicted Functional Partners:

mvk

0.714

LOC107096832

0.672

LOC107103862

0.670

LOC107088034

0.670

LOC107088342

0.646

Wasl

0.646

was

0.646

LOC107094012

0.593

LOC107085238

0.593

sh3d19

0.554

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107081285	LOC107085238	ENSCVAP00000007341	ENSCVAP00000027808	SH3 and SYLF domain containing 1.	Uncharacterized protein.	0.593
LOC107081285	LOC107088034	ENSCVAP00000007341	ENSCVAP00000013345	SH3 and SYLF domain containing 1.	Protein tyrosine phosphatase receptor type Na.	0.670
LOC107081285	LOC107088342	ENSCVAP00000007341	ENSCVAP00000005556	SH3 and SYLF domain containing 1.	WASP like actin nucleation promoting factor b.	0.646
LOC107081285	LOC107094012	ENSCVAP00000007341	ENSCVAP00000004226	SH3 and SYLF domain containing 1.	WH1 domain-containing protein.	0.593
LOC107081285	LOC107096832	ENSCVAP00000007341	ENSCVAP00000004172	SH3 and SYLF domain containing 1.	Uncharacterized protein.	0.672
LOC107081285	LOC107103862	ENSCVAP00000007341	ENSCVAP00000002497	SH3 and SYLF domain containing 1.	Protein tyrosine phosphatase receptor type Na.	0.670
LOC107081285	Wasl	ENSCVAP00000007341	ENSCVAP00000008065	SH3 and SYLF domain containing 1.	WH1 domain-containing protein.	0.646
LOC107081285	mvk	ENSCVAP00000007341	ENSCVAP00000021622	SH3 and SYLF domain containing 1.	Mevalonate kinase; Catalyzes the phosphorylation of mevalonate to mevalonate 5- phosphate, a key step in isoprenoid and cholesterol biosynthesis. Belongs to the GHMP kinase family. Mevalonate kinase subfamily.	0.714
LOC107081285	sh3d19	ENSCVAP00000007341	ENSCVAP00000030519	SH3 and SYLF domain containing 1.	SH3 domain containing 19.	0.554
LOC107081285	was	ENSCVAP00000007341	ENSCVAP00000018444	SH3 and SYLF domain containing 1.	Uncharacterized protein.	0.646
LOC107085238	LOC107081285	ENSCVAP00000027808	ENSCVAP00000007341	Uncharacterized protein.	SH3 and SYLF domain containing 1.	0.593
LOC107088034	LOC107081285	ENSCVAP00000013345	ENSCVAP00000007341	Protein tyrosine phosphatase receptor type Na.	SH3 and SYLF domain containing 1.	0.670
LOC107088342	LOC107081285	ENSCVAP00000005556	ENSCVAP00000007341	WASP like actin nucleation promoting factor b.	SH3 and SYLF domain containing 1.	0.646
LOC107088342	LOC107094012	ENSCVAP00000005556	ENSCVAP00000004226	WASP like actin nucleation promoting factor b.	WH1 domain-containing protein.	0.905
LOC107088342	Wasl	ENSCVAP00000005556	ENSCVAP00000008065	WASP like actin nucleation promoting factor b.	WH1 domain-containing protein.	0.900
LOC107094012	LOC107081285	ENSCVAP00000004226	ENSCVAP00000007341	WH1 domain-containing protein.	SH3 and SYLF domain containing 1.	0.593
LOC107094012	LOC107088342	ENSCVAP00000004226	ENSCVAP00000005556	WH1 domain-containing protein.	WASP like actin nucleation promoting factor b.	0.905
LOC107094012	Wasl	ENSCVAP00000004226	ENSCVAP00000008065	WH1 domain-containing protein.	WH1 domain-containing protein.	0.900
LOC107096832	LOC107081285	ENSCVAP00000004172	ENSCVAP00000007341	Uncharacterized protein.	SH3 and SYLF domain containing 1.	0.672
LOC107103862	LOC107081285	ENSCVAP00000002497	ENSCVAP00000007341	Protein tyrosine phosphatase receptor type Na.	SH3 and SYLF domain containing 1.	0.670