STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msi1Musashi RNA binding protein 1. (359 aa)    
Predicted Functional Partners:
msi2
Musashi RNA-binding protein 2a.
  
  
 
0.901
zc3h14
Zinc finger CCCH-type containing 14.
    
 
 0.758
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
  
 
 0.731
rbfox3
RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.
  
 
 0.644
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
   
 
 0.528
TNPO2
Transportin 2.
   
 
 0.523
tnpo1
Transportin 1.
   
 
 0.523
tnpo2
Transportin 2 (importin 3, karyopherin beta 2b).
   
 
 0.523
ENSCVAP00000000909
Serine and arginine rich splicing factor 6.
  
 0.510
tra2a
RRM domain-containing protein.
  
 
 0.462
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.