STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107100736Uncharacterized protein. (75 aa)    
Predicted Functional Partners:
ENSCVAP00000019170
BHLH domain-containing protein.
    
 0.751
LOC107083754
T-cell acute lymphocytic leukemia 1.
    
 0.751
myf5
Myogenic factor.
    
 0.722
LOC107083874
Myogenic factor.
    
 0.722
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.710
ENSCVAP00000007008
Achaete-scute family bHLH transcription factor 1b.
   
 0.651
Ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 0.651
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.650
myog
Myogenin.
   
 0.647
LOC107093887
Inhibitor of DNA binding 1, HLH protein.
    
 
 0.621
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.