STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdm6bLysine (K)-specific demethylase 6B, a. (2093 aa)    
Predicted Functional Partners:
rbbp5
Retinoblastoma binding protein 5.
    
 0.952
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.952
atp5f1d
ATP synthase F1 subunit delta.
  
 0.941
ATP6
ATP synthase subunit a.
  
 0.938
birc6
Baculoviral IAP repeat containing 6.
   
 0.934
Birc6
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.934
atp5f1c
ATP synthase subunit gamma.
  
 0.930
atp5po
ATP synthase peripheral stalk subunit OSCP.
  
 0.924
LOC107086291
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 0.903
LOC107088948
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 0.903
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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