STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
marchf1Membrane-associated ring finger (C3HC4) 1. (559 aa)    
Predicted Functional Partners:
LOC107089476
CCR4-NOT transcription complex, subunit 2.
    
 
 0.553
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 
 0.553
eea1
Early endosome antigen 1.
     
 0.551
tank
TRAF family member-associated NFKB activator.
   
  
 0.547
faf2
Fas associated factor family member 2.
    
 
 0.541
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.541
ube2g2
Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.477
cd83
Ig-like domain-containing protein.
      
 0.449
ube2j2
Ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast).
    
 
 0.435
LOC107098649
C1q and TNF related 12.
    
 
 0.435
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.