ENSCVAP00000007438 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCVAP00000007438

NR LBD domain-containing protein. (118 aa)

Predicted Functional Partners:

Hnf4a

0.928

ppargc1a

0.664

nr0b2

0.663

med1

0.599

hnf1a

0.591

rpl9

0.493

ENSCVAP00000002779

0.483

Ncor1

0.483

ncor2

0.483

LOC107092185

0.480

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000002779	ENSCVAP00000007438	ENSCVAP00000002779	ENSCVAP00000007438	GPS2_interact domain-containing protein.	NR LBD domain-containing protein.	0.483
ENSCVAP00000002779	Hnf4a	ENSCVAP00000002779	ENSCVAP00000024761	GPS2_interact domain-containing protein.	Hepatocyte nuclear factor 4, alpha.	0.483
ENSCVAP00000002779	Ncor1	ENSCVAP00000002779	ENSCVAP00000002805	GPS2_interact domain-containing protein.	Uncharacterized protein.	0.940
ENSCVAP00000002779	med1	ENSCVAP00000002779	ENSCVAP00000006265	GPS2_interact domain-containing protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.598
ENSCVAP00000002779	nr0b2	ENSCVAP00000002779	ENSCVAP00000017071	GPS2_interact domain-containing protein.	Nuclear receptor subfamily 0, group B, member 2a.	0.603
ENSCVAP00000002779	ppargc1a	ENSCVAP00000002779	ENSCVAP00000029047	GPS2_interact domain-containing protein.	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	0.446
ENSCVAP00000002779	rpl9	ENSCVAP00000002779	ENSCVAP00000005796	GPS2_interact domain-containing protein.	Ribosomal protein L9.	0.427
ENSCVAP00000007438	ENSCVAP00000002779	ENSCVAP00000007438	ENSCVAP00000002779	NR LBD domain-containing protein.	GPS2_interact domain-containing protein.	0.483
ENSCVAP00000007438	Hnf4a	ENSCVAP00000007438	ENSCVAP00000024761	NR LBD domain-containing protein.	Hepatocyte nuclear factor 4, alpha.	0.928
ENSCVAP00000007438	LOC107092185	ENSCVAP00000007438	ENSCVAP00000011416	NR LBD domain-containing protein.	Proliferation-associated 2G4, b.	0.480
ENSCVAP00000007438	Ncor1	ENSCVAP00000007438	ENSCVAP00000002805	NR LBD domain-containing protein.	Uncharacterized protein.	0.483
ENSCVAP00000007438	hnf1a	ENSCVAP00000007438	ENSCVAP00000024789	NR LBD domain-containing protein.	HNF1 homeobox a.	0.591
ENSCVAP00000007438	med1	ENSCVAP00000007438	ENSCVAP00000006265	NR LBD domain-containing protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.599
ENSCVAP00000007438	ncor2	ENSCVAP00000007438	ENSCVAP00000027319	NR LBD domain-containing protein.	Nuclear receptor corepressor 2.	0.483
ENSCVAP00000007438	nr0b2	ENSCVAP00000007438	ENSCVAP00000017071	NR LBD domain-containing protein.	Nuclear receptor subfamily 0, group B, member 2a.	0.663
ENSCVAP00000007438	ppargc1a	ENSCVAP00000007438	ENSCVAP00000029047	NR LBD domain-containing protein.	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	0.664
ENSCVAP00000007438	rpl9	ENSCVAP00000007438	ENSCVAP00000005796	NR LBD domain-containing protein.	Ribosomal protein L9.	0.493
Hnf4a	ENSCVAP00000002779	ENSCVAP00000024761	ENSCVAP00000002779	Hepatocyte nuclear factor 4, alpha.	GPS2_interact domain-containing protein.	0.483
Hnf4a	ENSCVAP00000007438	ENSCVAP00000024761	ENSCVAP00000007438	Hepatocyte nuclear factor 4, alpha.	NR LBD domain-containing protein.	0.928
Hnf4a	LOC107092185	ENSCVAP00000024761	ENSCVAP00000011416	Hepatocyte nuclear factor 4, alpha.	Proliferation-associated 2G4, b.	0.480