STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107101928C3H1-type domain-containing protein. (2635 aa)    
Predicted Functional Partners:
exosc7
Exosome component 7.
   
 0.897
exosc1
Exosome component 1.
   
 0.897
exosc10
Exosome component 10.
   
 0.895
exosc9
Exosome component 9.
   
 0.888
mtrex
Mtr4 exosome RNA helicase.
   
 0.887
exosc5
Exosome component 5.
   
 0.886
exosc8
Exosome component 8.
   
 0.885
exosc2
Exosome component 2.
   
 0.878
exosc3
Exosome component 3.
   
 0.876
hbs1l
HBS1-like translational GTPase.
   
 0.859
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.