STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095569T cell lymphoma invasion and metastasis 1b. (1528 aa)    
Predicted Functional Partners:
LOC107104443
Intersectin 2b.
    
0.531
ENSCVAP00000031587
Uncharacterized protein.
    
 0.531
ENSCVAP00000031602
Uncharacterized protein.
    
0.531
itsn1
Intersectin 1 (SH3 domain protein).
    
0.524
LOC107082256
Uncharacterized protein.
    
 0.486
LOC107086129
Uncharacterized protein.
    
 0.486
Rhoh
Ras homolog family member H.
    
 0.486
LOC107092157
Uncharacterized protein.
    
 0.486
rac2
Uncharacterized protein.
    
 0.486
LOC107092536
Rac family small GTPase 1b.
    
 0.486
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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