STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nedd4NEDD4 E3 ubiquitin protein ligase a. (1224 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.834
arrdc3
Arrestin domain containing 3a.
    
 
 0.783
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.759
ENSCVAP00000021667
Ubiquitin-like domain-containing protein.
    
 0.740
LOC107094788
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
    
 0.740
smad2
Mothers against decapentaplegic homolog.
    
 0.711
LOC107098778
Mothers against decapentaplegic homolog.
    
 0.711
smad3
Mothers against decapentaplegic homolog.
    
 0.711
SMAD3
Mothers against decapentaplegic homolog.
    
 0.711
smad7
Mothers against decapentaplegic homolog.
    
 0.691
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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