STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107085987Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1252 aa)    
Predicted Functional Partners:
ENSCVAP00000002035
Cation_ATPase_C domain-containing protein.
  
 
 0.729
prkacb
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 
 0.709
LOC107090031
Protein kinase, cAMP-dependent, catalytic, beta b; Belongs to the protein kinase superfamily.
   
 
 0.709
LOC107093417
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.
   
 
 0.709
prkaca
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 
 0.709
pln
Si:ch211-270g19.5.
    
 0.673
sh2d3c
SH2 domain containing 3Ca.
   
 
 0.646
ski
V-ski avian sarcoma viral oncogene homolog a.
    
 
 0.636
LOC107102383
Fibrinogen C domain containing 1.
     
 0.635
LOC107091177
Info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a.
   
  
 0.633
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.