STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdh17Cadherin 17, LI cadherin (liver-intestine). (865 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.732
LOC107090777
Junction plakoglobin a.
    
 0.644
ARVCF
ARVCF delta catenin family member b.
    
 0.616
CTNND1
Catenin delta 1.
    
 0.616
ctnnd1
Catenin (cadherin-associated protein), delta 1.
    
 0.616
LOC107101293
Uncharacterized protein.
    
 0.614
hnf1b
HNF1 homeobox Ba.
   
  
 0.600
ENSCVAP00000024898
Uncharacterized protein.
    
 0.578
ctnna1
Catenin (cadherin-associated protein), alpha 1.
    
 0.578
ctnna2
Catenin (cadherin-associated protein), alpha 2.
    
 0.578
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.