LOC107098272 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107098272

Human immunodeficiency virus type I enhancer binding protein 3a. (1734 aa)

Predicted Functional Partners:

aif1l

0.531

AIF1

0.531

arid4b

0.511

LOC107089012

0.451

ncan

0.450

KRT222

0.435

ppp1r26

0.430

LOC107097531

0.424

wwp2

0.419

LOC107084905

0.419

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIF1	LOC107098272	ENSCVAP00000024393	ENSCVAP00000007586	Allograft inflammatory factor 1.	Human immunodeficiency virus type I enhancer binding protein 3a.	0.531
KRT222	LOC107098272	ENSCVAP00000006484	ENSCVAP00000007586	Keratin 222; Belongs to the intermediate filament family.	Human immunodeficiency virus type I enhancer binding protein 3a.	0.435
LOC107084905	LOC107098272	ENSCVAP00000025238	ENSCVAP00000007586	E3 ubiquitin-protein ligase.	Human immunodeficiency virus type I enhancer binding protein 3a.	0.419
LOC107089012	LOC107098272	ENSCVAP00000018808	ENSCVAP00000007586	Shisa family member 7.	Human immunodeficiency virus type I enhancer binding protein 3a.	0.451
LOC107089012	arid4b	ENSCVAP00000018808	ENSCVAP00000002162	Shisa family member 7.	Translocase of outer mitochondrial membrane 20.	0.406
LOC107097531	LOC107098272	ENSCVAP00000016758	ENSCVAP00000007586	Uncharacterized protein.	Human immunodeficiency virus type I enhancer binding protein 3a.	0.424
LOC107097531	ncan	ENSCVAP00000016758	ENSCVAP00000003826	Uncharacterized protein.	Uncharacterized protein.	0.448
LOC107097531	ppp1r26	ENSCVAP00000016758	ENSCVAP00000012093	Uncharacterized protein.	Uncharacterized protein.	0.438
LOC107098272	AIF1	ENSCVAP00000007586	ENSCVAP00000024393	Human immunodeficiency virus type I enhancer binding protein 3a.	Allograft inflammatory factor 1.	0.531
LOC107098272	KRT222	ENSCVAP00000007586	ENSCVAP00000006484	Human immunodeficiency virus type I enhancer binding protein 3a.	Keratin 222; Belongs to the intermediate filament family.	0.435
LOC107098272	LOC107084905	ENSCVAP00000007586	ENSCVAP00000025238	Human immunodeficiency virus type I enhancer binding protein 3a.	E3 ubiquitin-protein ligase.	0.419
LOC107098272	LOC107089012	ENSCVAP00000007586	ENSCVAP00000018808	Human immunodeficiency virus type I enhancer binding protein 3a.	Shisa family member 7.	0.451
LOC107098272	LOC107097531	ENSCVAP00000007586	ENSCVAP00000016758	Human immunodeficiency virus type I enhancer binding protein 3a.	Uncharacterized protein.	0.424
LOC107098272	aif1l	ENSCVAP00000007586	ENSCVAP00000023113	Human immunodeficiency virus type I enhancer binding protein 3a.	Allograft inflammatory factor 1-like.	0.531
LOC107098272	arid4b	ENSCVAP00000007586	ENSCVAP00000002162	Human immunodeficiency virus type I enhancer binding protein 3a.	Translocase of outer mitochondrial membrane 20.	0.511
LOC107098272	ncan	ENSCVAP00000007586	ENSCVAP00000003826	Human immunodeficiency virus type I enhancer binding protein 3a.	Uncharacterized protein.	0.450
LOC107098272	ppp1r26	ENSCVAP00000007586	ENSCVAP00000012093	Human immunodeficiency virus type I enhancer binding protein 3a.	Uncharacterized protein.	0.430
LOC107098272	wwp2	ENSCVAP00000007586	ENSCVAP00000003510	Human immunodeficiency virus type I enhancer binding protein 3a.	E3 ubiquitin-protein ligase.	0.419
aif1l	LOC107098272	ENSCVAP00000023113	ENSCVAP00000007586	Allograft inflammatory factor 1-like.	Human immunodeficiency virus type I enhancer binding protein 3a.	0.531
arid4b	LOC107089012	ENSCVAP00000002162	ENSCVAP00000018808	Translocase of outer mitochondrial membrane 20.	Shisa family member 7.	0.406