STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccpg1Uncharacterized protein. (783 aa)    
Predicted Functional Partners:
rb1cc1
RB1-inducible coiled-coil 1.
   
 0.950
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.776
sec62
SEC62 homolog, preprotein translocation factor.
   
 
 0.681
rtn3
Reticulon.
    
 0.671
LOC107093330
Testis expressed 264, ER-phagy receptor a.
      
 0.643
TEX264
Testis expressed 264, ER-phagy receptor.
      
 0.643
LOC107092558
Atlastin 3.
      
 0.643
retreg1
Reticulophagy regulator 1.
    
 
 0.584
ranbp2
RAN binding protein 2.
    
 0.529
retreg2
Reticulophagy regulator family member 2.
    
 
 0.488
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.