STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107098265Stathmin; Belongs to the stathmin family. (151 aa)    
Predicted Functional Partners:
LOC107101186
Mitogen-activated protein kinase.
    
 0.911
mapk1
Mitogen-activated protein kinase.
    
 0.911
LOC107088515
Stathmin; Belongs to the stathmin family.
  
  
 
0.901
Nek1
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 
 0.684
ENSCVAP00000021138
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.636
uhmk1
U2AF homology motif (UHM) kinase 1.
    
 
 0.616
ENSCVAP00000019204
Uncharacterized protein.
      
 0.572
LOC107099875
Baculoviral IAP repeat containing 5a.
   
 0.544
hunk
Hormonally up-regulated Neu-associated kinase.
    
 
 0.528
dyrk2
Dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2.
    
 
 0.522
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.