STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107098269Si:ch211-255i3.4. (176 aa)    
Predicted Functional Partners:
LOC107091681
Fatty acid binding protein 6, ileal (gastrotropin).
   
 
 0.584
ppard
Peroxisome proliferator-activated receptor delta b.
    
 0.537
Lipe
Lipase, hormone-sensitive b.
   
 0.501
elovl5
Elongation of very long chain fatty acids protein.
   
  
 0.426
ech1
Enoyl CoA hydratase 1, peroxisomal.
      
 0.425
mtor
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
      
 0.423
acox3
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
    
 0.413
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.