STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddit3DNA-damage-inducible transcript 3. (309 aa)    
Predicted Functional Partners:
LOC107090074
Activating transcription factor 4a.
   
 0.986
atf4
Activating transcription factor 4b.
   
 0.978
xbp1
X-box binding protein 1.
   
 0.962
atf6
Activating transcription factor 6.
   
 0.959
atf6b
BZIP domain-containing protein.
   
 0.959
LOC107080667
Uncharacterized protein.
   
 0.930
LOC107083382
BCL2 apoptosis regulator b.
   
 0.930
LOC107086723
Mitogen-activated protein kinase.
   
 0.926
LOC107101432
Mitogen-activated protein kinase.
   
 0.926
LOC107087504
Mitogen-activated protein kinase.
   
 0.926
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.