STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stx17Syntaxin 17; Belongs to the syntaxin family. (297 aa)    
Predicted Functional Partners:
LOC107086509
Vesicle-associated membrane protein 8 (endobrevin).
   
 0.999
snap29
Synaptosome associated protein 29.
   
 0.999
vps39
VPS39 subunit of HOPS complex.
   
 
 0.981
atg14
Autophagy related 14.
   
 0.977
LOC107102182
Si:ch73-234b20.5.
   
 0.976
vps41
Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.
   
 
 0.965
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
   
 0.955
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.890
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
   
 0.863
vps16
Vacuolar protein sorting 16 homolog.
    
 
 0.861
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.