STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ticrrUncharacterized protein. (1700 aa)    
Predicted Functional Partners:
topbp1
DNA topoisomerase II binding protein 1.
    
 
 0.886
fbl
Fibrillarin.
   
 
 0.856
tbl3
Transducin (beta)-like 3.
   
 
 0.781
ENSCVAP00000005887
XPGI domain-containing protein.
  
 
 0.777
cdc45
CDC45 cell division cycle 45 homolog (S. cerevisiae).
   
  
 0.777
mcm10
Minichromosome maintenance 10 replication initiation factor.
   
  
 0.760
espl1
Extra spindle pole bodies like 1, separase.
  
 
 0.746
wdr36
WD repeat domain 36.
   
 
 0.742
mtbp
MDM2 binding protein.
   
 0.730
snw1
SNW domain containing 1.
    
 0.726
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.