LOC107102520 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107102520

Uncharacterized protein. (413 aa)

Predicted Functional Partners:

arhgef1

0.977

lpar1

0.953

LOC107086830

0.949

LOC107102260

0.949

LOC107083593

0.946

LOC107098358

0.945

adra1b

0.945

LOC107090355

0.934

lpar2

0.929

LOC107090067

0.929

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107083593	LOC107102520	ENSCVAP00000027955	ENSCVAP00000007729	Adrenoceptor alpha 1D.	Uncharacterized protein.	0.946
LOC107086830	LOC107102520	ENSCVAP00000015478	ENSCVAP00000007729	Adrenoceptor alpha 1Aa.	Uncharacterized protein.	0.949
LOC107086830	arhgef1	ENSCVAP00000015478	ENSCVAP00000012411	Adrenoceptor alpha 1Aa.	Rho guanine nucleotide exchange factor (GEF) 1b.	0.442
LOC107090067	LOC107102520	ENSCVAP00000023063	ENSCVAP00000007729	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.929
LOC107090067	lpar1	ENSCVAP00000023063	ENSCVAP00000022474	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Lysophosphatidic acid receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.964
LOC107090067	lpar2	ENSCVAP00000023063	ENSCVAP00000000104	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Lysophosphatidic acid receptor 2a; Belongs to the G-protein coupled receptor 1 family.	0.902
LOC107090355	LOC107102520	ENSCVAP00000011181	ENSCVAP00000007729	Zgc:171965; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.934
LOC107098358	LOC107102520	ENSCVAP00000005118	ENSCVAP00000007729	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.945
LOC107102260	LOC107102520	ENSCVAP00000029205	ENSCVAP00000007729	Adrenoceptor alpha 1Ab.	Uncharacterized protein.	0.949
LOC107102260	arhgef1	ENSCVAP00000029205	ENSCVAP00000012411	Adrenoceptor alpha 1Ab.	Rho guanine nucleotide exchange factor (GEF) 1b.	0.442
LOC107102520	LOC107083593	ENSCVAP00000007729	ENSCVAP00000027955	Uncharacterized protein.	Adrenoceptor alpha 1D.	0.946
LOC107102520	LOC107086830	ENSCVAP00000007729	ENSCVAP00000015478	Uncharacterized protein.	Adrenoceptor alpha 1Aa.	0.949
LOC107102520	LOC107090067	ENSCVAP00000007729	ENSCVAP00000023063	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.929
LOC107102520	LOC107090355	ENSCVAP00000007729	ENSCVAP00000011181	Uncharacterized protein.	Zgc:171965; Belongs to the G-protein coupled receptor 1 family.	0.934
LOC107102520	LOC107098358	ENSCVAP00000007729	ENSCVAP00000005118	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.945
LOC107102520	LOC107102260	ENSCVAP00000007729	ENSCVAP00000029205	Uncharacterized protein.	Adrenoceptor alpha 1Ab.	0.949
LOC107102520	adra1b	ENSCVAP00000007729	ENSCVAP00000016401	Uncharacterized protein.	Adrenoceptor alpha 1Bb.	0.945
LOC107102520	arhgef1	ENSCVAP00000007729	ENSCVAP00000012411	Uncharacterized protein.	Rho guanine nucleotide exchange factor (GEF) 1b.	0.977
LOC107102520	lpar1	ENSCVAP00000007729	ENSCVAP00000022474	Uncharacterized protein.	Lysophosphatidic acid receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.953
LOC107102520	lpar2	ENSCVAP00000007729	ENSCVAP00000000104	Uncharacterized protein.	Lysophosphatidic acid receptor 2a; Belongs to the G-protein coupled receptor 1 family.	0.929