STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000007731Uncharacterized protein. (74 aa)    
Predicted Functional Partners:
ENSCVAP00000012080
Vesicle (multivesicular body) trafficking 1.
   
 0.977
LOC107102505
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
   
 0.975
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
   
 0.975
LOC107099453
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.975
chmp2a
Charged multivesicular body protein 2A.
   
 0.951
chmp3
Charged multivesicular body protein 3.
   
 0.904
ist1
IST1 factor associated with ESCRT-III.
    
 
 0.904
chmp5
Charged multivesicular body protein 5b.
  
  
 
0.900
LOC107086476
Charged multivesicular body protein 4C.
   
 0.834
LOC107093444
Uncharacterized protein.
   
 0.834
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.