STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
banf1Barrier to autointegration factor 1. (102 aa)    
Predicted Functional Partners:
lemd3
LEM domain containing 3.
   
 0.818
ankle2
Ankyrin repeat and LEM domain containing 2.
    
 0.804
lmnb2
Lamin B2; Belongs to the intermediate filament family.
   
 0.736
vrk1
VRK serine/threonine kinase 1; Belongs to the protein kinase superfamily.
    
 0.727
lmnb1
Lamin B1; Belongs to the intermediate filament family.
   
 0.727
LOC107081765
VRK serine/threonine kinase 2.
    
 0.727
LOC107090817
Uncharacterized protein; Belongs to the intermediate filament family.
   
 0.723
lmna
Lamin A; Belongs to the intermediate filament family.
   
 0.723
LOC107103540
Uncharacterized protein.
   
 0.717
LOC107097557
RNA binding motif protein 39b.
   
 0.717
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.