STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107082498Nance-Horan syndrome b (congenital cataracts and dental anomalies). (1414 aa)    
Predicted Functional Partners:
RAI2
Retinoic acid induced 2.
    
 0.524
mib1
Mindbomb E3 ubiquitin protein ligase 1.
   
 0.520
nckap1
NCK-associated protein 1.
    
  0.485
nckap1l
NCK associated protein 1 like.
    
  0.485
trip11
Thyroid hormone receptor interactor 11.
   
 0.459
BRK1
BRICK1 subunit of SCAR/WAVE actin nucleating complex.
    
  0.448
LOC107085095
Membrane protein, palmitoylated 3b (MAGUK p55 subfamily member 3); Belongs to the MAGUK family.
    
  0.428
ENSCVAP00000017871
Uncharacterized protein; Belongs to the MAGUK family.
    
  0.428
mpp7
Membrane protein, palmitoylated 7a (MAGUK p55 subfamily member 7); Belongs to the MAGUK family.
    
  0.428
mpp3
Membrane protein, palmitoylated 3a (MAGUK p55 subfamily member 3); Belongs to the MAGUK family.
    
  0.428
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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