STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lypla1Lysophospholipase 1. (232 aa)    
Predicted Functional Partners:
gpcpd1
Glycerophosphocholine phosphodiesterase 1.
    
 0.943
ENSCVAP00000019836
Uncharacterized protein.
     
 0.912
PLA2G15
Phospholipase A2 group XV.
     
 0.912
LOC107088471
Si:dkey-177p2.18.
     
 0.912
lcat
Lecithin-cholesterol acyltransferase.
     
 0.906
LOC107100080
Uncharacterized protein.
  
 
  0.901
pnpla7
Patatin-like phospholipase domain containing 7b.
  
 
  0.901
LOC107083430
Patatin-like phospholipase domain containing 6.
  
 
  0.901
chaf1b
Chromatin assembly factor 1, subunit B.
    
 
 0.722
lpcat3
Lysophosphatidylcholine acyltransferase 3; Belongs to the membrane-bound acyltransferase family.
   
 
 0.714
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.