STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox17SRY-box transcription factor 17. (397 aa)    
Predicted Functional Partners:
lef1
Lymphoid enhancer-binding factor 1.
    
0.962
tcf7
Transcription factor 7.
    
0.955
tcf7l2
Transcription factor 7 like 2.
    
0.945
LOC107082304
Transcription factor 7 like 1b.
    
0.945
LOC107088696
POU domain, class 5, transcription factor 3.
    
 0.757
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.702
dmrta2
DMRT-like family A2.
    
 0.689
foxa2
Forkhead box A2.
    
 
 0.640
LOC107089788
T-box transcription factor Ta.
    
 0.566
gata6
GATA binding protein 6.
   
 0.561
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.