STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107102505Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family. (436 aa)    
Predicted Functional Partners:
chmp1b
Chromatin modifying protein 1B.
   
 0.981
chmp1a
Charged multivesicular body protein 1A.
   
 0.980
ENSCVAP00000007731
Uncharacterized protein.
   
 0.975
chmp5
Charged multivesicular body protein 5b.
   
 0.975
ENSCVAP00000012080
Vesicle (multivesicular body) trafficking 1.
   
 0.949
chmp2a
Charged multivesicular body protein 2A.
    
 0.947
ist1
IST1 factor associated with ESCRT-III.
   
 0.945
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
  
  
 
0.939
LOC107099453
Uncharacterized protein; Belongs to the AAA ATPase family.
  
  
 
0.939
chmp6
Charged multivesicular body protein 6.
    
 0.884
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.