STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps41Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family. (854 aa)    
Predicted Functional Partners:
vps11
Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family.
   
 0.999
vps16
Vacuolar protein sorting 16 homolog.
    
 0.999
vps18
VPS18 core subunit of CORVET and HOPS complexes.
    
 0.999
vps39
VPS39 subunit of HOPS complex.
   
 0.999
vps33a
VPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.996
tgfbrap1
Transforming growth factor, beta receptor associated protein 1.
   
 0.995
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
    
 
 0.979
ccz1
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
    
 
 0.979
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 
 0.979
LOC107086509
Vesicle-associated membrane protein 8 (endobrevin).
    
 
 0.976
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.