ENSCVAP00000007873 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCVAP00000007873

RNA polymerase I and III subunit C. (152 aa)

Predicted Functional Partners:

polr2f

0.993

twistnb

0.991

polr2l

0.989

POLR2E

0.989

polr1a

0.989

polr3a

0.989

LOC107082378

0.989

polr1b

0.988

polr3b

0.988

polr1e

0.985

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000007873	LOC107082378	ENSCVAP00000007873	ENSCVAP00000030173	RNA polymerase I and III subunit C.	RNA polymerase I and III subunit D.	0.989
ENSCVAP00000007873	POLR2E	ENSCVAP00000007873	ENSCVAP00000016892	RNA polymerase I and III subunit C.	RNA polymerase II subunit E.	0.989
ENSCVAP00000007873	polr1a	ENSCVAP00000007873	ENSCVAP00000017722	RNA polymerase I and III subunit C.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.989
ENSCVAP00000007873	polr1b	ENSCVAP00000007873	ENSCVAP00000004502	RNA polymerase I and III subunit C.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.988
ENSCVAP00000007873	polr1e	ENSCVAP00000007873	ENSCVAP00000030904	RNA polymerase I and III subunit C.	RNA polymerase I subunit E.	0.985
ENSCVAP00000007873	polr2f	ENSCVAP00000007873	ENSCVAP00000008607	RNA polymerase I and III subunit C.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.993
ENSCVAP00000007873	polr2l	ENSCVAP00000007873	ENSCVAP00000005930	RNA polymerase I and III subunit C.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.989
ENSCVAP00000007873	polr3a	ENSCVAP00000007873	ENSCVAP00000019560	RNA polymerase I and III subunit C.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.989
ENSCVAP00000007873	polr3b	ENSCVAP00000007873	ENSCVAP00000023310	RNA polymerase I and III subunit C.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.988
ENSCVAP00000007873	twistnb	ENSCVAP00000007873	ENSCVAP00000011966	RNA polymerase I and III subunit C.	TWIST neighbor.	0.991
LOC107082378	ENSCVAP00000007873	ENSCVAP00000030173	ENSCVAP00000007873	RNA polymerase I and III subunit D.	RNA polymerase I and III subunit C.	0.989
LOC107082378	POLR2E	ENSCVAP00000030173	ENSCVAP00000016892	RNA polymerase I and III subunit D.	RNA polymerase II subunit E.	0.999
LOC107082378	polr1a	ENSCVAP00000030173	ENSCVAP00000017722	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
LOC107082378	polr1b	ENSCVAP00000030173	ENSCVAP00000004502	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
LOC107082378	polr1e	ENSCVAP00000030173	ENSCVAP00000030904	RNA polymerase I and III subunit D.	RNA polymerase I subunit E.	0.992
LOC107082378	polr2f	ENSCVAP00000030173	ENSCVAP00000008607	RNA polymerase I and III subunit D.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.999
LOC107082378	polr2l	ENSCVAP00000030173	ENSCVAP00000005930	RNA polymerase I and III subunit D.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.999
LOC107082378	polr3a	ENSCVAP00000030173	ENSCVAP00000019560	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
LOC107082378	polr3b	ENSCVAP00000030173	ENSCVAP00000023310	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
LOC107082378	twistnb	ENSCVAP00000030173	ENSCVAP00000011966	RNA polymerase I and III subunit D.	TWIST neighbor.	0.999