STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107097770Activating transcription factor 5b. (504 aa)    
Predicted Functional Partners:
LOC107103704
Nuclear factor, interleukin 3 regulated, member 6.
  
 0.583
rbp2
Retinol binding protein 2a, cellular; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
      
 0.547
xbp1
X-box binding protein 1.
   
 
 0.508
ddit3
DNA-damage-inducible transcript 3.
   
 0.500
mknk2
MAPK interacting serine/threonine kinase 2b; Belongs to the protein kinase superfamily.
      
 0.497
asns
Asparagine synthetase [glutamine-hydrolyzing].
   
 
 0.493
LOC107090721
CCAAT enhancer binding protein beta.
   
 0.458
hspa5
Heat shock protein 5; Belongs to the heat shock protein 70 family.
   
 0.458
eif2s1
Eukaryotic translation initiation factor 2, subunit 1 alpha b.
     
 0.453
LOC107095244
CCAAT/enhancer binding protein (C/EBP) 1.
   
 0.451
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.