STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107089920Spalt-like transcription factor 3a. (989 aa)    
Predicted Functional Partners:
rbbp4
Retinoblastoma binding protein 4.
   
 0.720
LOC107088696
POU domain, class 5, transcription factor 3.
   
 0.670
wdr73
WD repeat domain 73.
    
 0.580
bsx
Brain-specific homeobox.
   
 0.551
sall4
Spalt-like transcription factor 4.
    
0.536
gatad2a
GATA zinc finger domain containing 2Ab.
    
 0.506
gatad2b
GATA zinc finger domain containing 2B.
    
 0.506
LOC107092326
Uncharacterized protein.
    
 0.506
chd3
Chromodomain helicase DNA binding protein 3.
    
 0.457
chd4
Uncharacterized protein.
    
 0.457
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.